Selected Publications

William J. Hatchett, Alexander Jueterbock, Martina Kopp, James A. Coyer, Susana M. Coelho, Galice Hoarau, Agnieszka P. Lipinska (2021) Evolutionary dynamics of sex-biased gene expression in a young XY system: Insights from the brown alga genus Fucus . 2021 December, bioRxiv, doi: https://doi.org/10.1101/2021.08.12.455804.

Badis, Y, Scornet, D, Harada, M, Caillard, C, Godfroy, O, Raphalen, M, Gachon, C M, Coelho SM, Motomura, T, Nagasato, C, Cock, M. (2021) Targeted CRISPR-Cas9-based gene knockouts in the model brown alga Ectocarpus. 2021 September, New Phytologist, doi: 10.1111/nph.17525. PubMed

Heesch S, Serrano-Serrano M, Barrera-Redondo, Luthringer R, Peters AF, Destombe C, Cock JM, Valero M, Roze D, Salamin N, Coelho SM. (2021) Evolution of life cycles and reproductive traits: insights from the brown algae. 2021 July, J. Evol. Biology, doi: 10.1111/jeb.13880. PubMed

Mueller, Di, Gaschet, E, Godfroy, O, Gueno, J, Cossard, G, Kunert, M, Peters, AF, Westermayer, Renato; Boland, Wilhelm; Cock, Mark; Lipinska, Agnieszka; Coelho, Susana (2021) A partially sex-reversed giant kelp sheds light into the mechanisms of sexual differentiation in a UV sexual system. 2021 October, New Phytologist, doi: 10.1111/nph.17582. PubMed

Coelho SM, Cock JM (2021) Genetic and developmental mechanisms of cellular differentiation in algae. In “The evolution of multicellularity” editors Herron, Conlin, Rattlif, March 28, 2022, CRC Press, ISBN 9780367356965

Coelho SM, Umen J (2021) Switching It Up: Algal Insights into Sexual Transitions. 2021 June, Plant Reproduction, doi: 10.1007/s00497-021-00417-0. PubMed

Vigneau, J. and Borg, M., 2021. The epigenetic origin of life history transitions in plants and algae. 2021 July, Plant Reproduction, doi: 10.1007/s00497-021-00422-3. PubMed

Dieter Mueller, Enora Gachet, Olivier Godfroy, Josselin Gueno, Guillaume Cossard, Maritta Kunert, Akira F Peters, Renato H Westermeier, Wilhem Boland, J. Mark Cock, Agnieszka Lipinska, Susana M Coelho (2021). A partially sex-reversed giant kelp sheds light into the mechanisms of sexual differentiation in a UV sexual system. 2021 October, New Phytologist, doi: 10.1111/nph.17582. PubMed

Bourdareau S, Tirichine L, Lombard B, Loew D, Scornet D, Coelho SM*, Cock JM* (2020) Histone modifications during the life cycle of the brown alga Ectocarpus. 2021 January, Genome Biology, doi: 10.1186/s13059-020-02216-8. PubMed

Gueno J, Bourdareau S, Cossard G, Godfroy O, Lipinska A, Tirichine L, Cock JM, Coelho SM (2020). Chromatin dynamics associated with sexual differentiation in a UV sex determination system. BioRxiv 2020.10.29.359190. Preprint

Coelho SM*, Cock JM (2020) Brown algal model organisms. 2020 November, Annu Review Genetics, doi: 10.1146/annurev-genet-030620-093031. PubMed

Coelho SM*, Muller D, Peters A, Cock JM (2020) Ectocarpus: an evo-devo model organism. 2020 August, Evo-devo Journal, doi: 10.1186/s13227-020-00164-9. PubMed

Boudry L, Marbouty M, Marie-Nelly H., Cormier A, Guiglielmoni N, Avia K, Sterck L, Cock JM, Zimmer C, Coelho SM*, Koszul R*. instaGRAAL: Chromosome-Level quality scaffolding of genomes using a proximity ligation-based scaffolder. 2020 July, Genome Biology, doi: 10.1186/s13059-020-02041-z. PubMed

Mignerot L, Nagasato C, Peters AF, Perrineau MM, Scornet D, Pontheaux F, Djema W, Motomura T, Coelho SM*, Cock JM* (2019). Unusual patterns of mitochondrial Inheritance in the brown alga Ectocarpus. 2019 December, Mol Biol Evol, doi: 10.1093/molbev/msz186. PubMed

Umen J, Coelho SM* (2019). Algal Sex Determination and the Evolution of Anisogamy. 2019 September, Ann. Rev. Microbiol doi.org/10.1146/annurev-micro-020518-120011. PubMed

Mignerot L, Avia K, Luthringer R, Lipinska A, Peters AF, Cock JM, Coelho SM* (2019). A key role for UV sex chromosomes in the regulation of parthenogenesis in the brown alga Ectocarpus. 2019 June, PloS Genetics, Jun 13;15(6) doi: 10.1371/journal.pgen.1008211. PubMed

Arun A*, Coelho SM*, Peters AF, Bourdareau S, Pérès L, Scornet D, Strittmatter M, Lipinska AP, Yao H, Godfroy O, Montecinos O, Avia O, Macaisne N, Troadec C, Bendahmane A, Cock JM (2019). Convergent recruitment of TALE homeodomain life cycle regulators to direct sporophyte development in land plants and brown algae 2019 January, Elife doi: doi: 10.7554/eLife.43101. PubMed

Coelho SM, Mignerot L, Cock JM (2018) Origin and evolution of sex-determination systems in the brown algae. 2019 June, New Phytologist, doi: 10.1111/nph.15694. PubMed

Lipinska AP, Serrano-Serrano M., Cormier A., Peters AF, Kogame K, Cock JM, Coelho SM (2018). Rapid turnover of life-cycle-related genes in the brown algae. 2019 February, Genome Biology, doi: 10.1186/s13059-019-1630-6. PubMed

Coelho SM, Gueno J, Lipinska AP, Cock JM, Umen JG (2018). UV chromosomes and haploid sexual systems. 2018 September, Trends in Plant Science, doi: 10.1016/j.tplants.2018.06.005. PubMed

Godfroy O, Uji T, Nagasato C, Lipinska AP, Scornet, Peters AF, Avia K Colin S, Mignerot L, Motomura T, Cock JM, Coelho SM (2017). DISTAG/TBCCd1 is required for basal cell fate determination in Ectocarpus. 2017 December, Plant Cell, doi: 10.1105/tpc.17.00440. PubMed

Lipinska A, Toda N, Heesch S, Peters A, Cock JM, Coelho SM (2017). Multiple gene movements into and out of haploid sex chromosomes. 2017 June, Genome Biology , doi: 10.1186/s13059-017-1201-7. PubMed

Luthringer R, Lipinska A, Roze D, Cormier A, Peters A, Cock JM, Coelho SM (2015). The pseudoautosomal regions of the U/V sex chromosomes of the brown alga Ectocarpus exhibit unusual features. 2015 November, Mol Biol Evol, doi: 10.1093/molbev/msv173. PubMed

Lipinska A, Cormier A, Luthringer R, Peters AF, Corre E, Gachon CMM, Cock JM, Coelho SM (2015). Sexual dimorphism and the evolution of sex-biased gene expression in the brown alga Ectocarpus. 2015 June, Mol Biol Evol, doi: 10.1093/molbev/msv049. PubMed

Ahmed S, Cock JM, Pessia E, Luthringer R, Cormier A, Robuchon M, Sterck L, Peters AF, Dittami SM, Corre E, Valero M, Aury J-M, Roze D, Van de Peer Y, Bothwell J, Marais G, Coelho SM (2014). A haploid system of sex determination in the brown alga Ectocarpus sp. 2014 September, Current Biology, doi: 10.1016/j.cub.2014.07.042. PubMed